../../tmp/servers/virsirnadb/392233983
Result for your query siRNA sequence
RED | =100 % Complementary sequence |
. | =Identical residue |
blue alphabets | =mismatch |
_ | =Gap |
Acc number | Strain name | Start | Alignment | End | % Identity |
Query | virsi1168 | 1 | ggctagctgtgaaaggtccgt | 21 | |
D85516.1 | Hepatitis C virus genomic RNA, complete cds | 9464 | ..................... | 9484 | 100 |
AF011751.1 | Hepatitis C virus strain H77 pCV-H77C polyprotein gene, complete cds | 9528 | ..................... | 9548 | 100 |
AF011752.1 | Hepatitis C virus strain H77 pCV-H11 polyprotein gene, complete cds | 9528 | ..................... | 9548 | 100 |
AF011753.1 | Hepatitis C virus strain H77 pH21 polyprotein gene, complete cds | 9528 | ..................... | 9548 | 100 |
D89815.1 | Hepatitis C virus genomic RNA, complete sequence | 9477 | ..................... | 9497 | 100 |
AF054247.1 | Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L6S, complete | 9524 | ..................... | 9544 | 100 |
AF054248.1 | Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L2S, complete | 9524 | ..................... | 9544 | 100 |
AF054249.1 | Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L4S, complete | 9525 | ..................... | 9545 | 100 |
AJ238799.1 | Hepatitis C virus type 1b complete genome, isolate Con1 | 9534 | ..................... | 9554 | 100 |
AF176573.1 | Hepatitis C virus subtype 1b strain 274933RU, complete genome | 9529 | ..................... | 9549 | 100 |
AB016785.1 | Hepatitis C virus genomic RNA, complete sequence | 9467 | ..................... | 9487 | 100 |
AF169002.1 | Hepatitis C virus subtype 2a isolate NDM228, complete genome | 9589 | ..................... | 9609 | 100 |
AF169003.1 | Hepatitis C virus subtype 2a isolate G2aK1, complete genome | 9622 | ..................... | 9642 | 100 |
AF169004.1 | Hepatitis C virus subtype 2a isolate G2aK3, complete genome | 9582 | ..................... | 9602 | 100 |
AF271632.1 | Hepatitis C virus subtype 1a clone pHCV-1/SF9 A, complete genome | 9547 | ..................... | 9567 | 100 |
AB030907.1 | Hepatitis C virus (isolate JPUT971017) genomic RNA, complete genome | 9583 | ..................... | 9603 | 100 |
AJ278830.1 | Hepatitis C virus genomic RNA for polyprotein gene | 9539 | ..................... | 9559 | 100 |
AB049088.1 | Hepatitis C virus genomic RNA, complete genome, isolate: HCVT094 | 9545 | ..................... | 9565 | 100 |
AB049089.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT10 | 9500 | ..................... | 9520 | 100 |
AB049090.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT14 | 9500 | ..................... | 9520 | 100 |
AB049091.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT14 | 9476 | ..................... | 9496 | 100 |
AB049095.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT16 | 9514 | ..................... | 9534 | 100 |
AB049101.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT22 | 9527 | ..................... | 9547 | 100 |
AF333324.1 | Hepatitis C virus type 1b polyprotein mRNA, complete cds | 9516 | ..................... | 9536 | 100 |
AB047639.1 | Hepatitis C virus (isolate JFH-1) genomic RNA, complete genome | 9607 | ..................... | 9627 | 100 |
AB047640.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-1 | 9603 | ..................... | 9623 | 100 |
AB047641.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-2 | 9588 | ..................... | 9608 | 100 |
AB047642.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-3 | 9607 | ..................... | 9627 | 100 |
AB047643.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-4 | 9570 | ..................... | 9590 | 100 |
AB047644.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-5 | 9620 | ..................... | 9640 | 100 |
AB047645.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-6 | 9612 | ..................... | 9632 | 100 |
AF356827.1 | Hepatitis C virus subtype 1b isolate HCV-S1, complete genome | 9538 | ..................... | 9558 | 100 |
AY045702.1 | Hepatitis C virus isolate HCR6, complete genome | 9540 | ..................... | 9560 | 100 |
AF139594.2 | Hepatitis C virus subtype 1b strain HCV-N, complete genome | 9545 | ..................... | 9565 | 100 |
AB080299.1 | Hepatitis C virus genomic RNA, complete genome, isolate:M1LE | 9516 | ..................... | 9536 | 100 |
AY460204.1 | Hepatitis C virus from Shanghai, complete genome | 9506 | ..................... | 9526 | 100 |
AY746460.1 | Hepatitis C virus genotype 2a polyprotein gene, complete cds | 9618 | ..................... | 9638 | 100 |
D84263.2 | Hepatitis C virus (isolate VN235) genomic RNA, complete genome | 9544 | ..................... | 9564 | 100 |
D84264.2 | Hepatitis C virus (isolate VN405) genomic RNA, complete genome | 9530 | ..................... | 9550 | 100 |
D84265.2 | Hepatitis C virus (isolate VN004) genomic RNA, complete genome | 9551 | ..................... | 9571 | 100 |
AB191333.1 | Hepatitis C virus genomic RNA, complete genome, strain:0 | 9516 | ..................... | 9536 | 100 |
DQ071885.1 | Hepatitis C virus subtype 1b polyprotein mRNA, complete cds | 9534 | ..................... | 9554 | 100 |
AB249644.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima | 9488 | ..................... | 9508 | 100 |
EF621489.1 | Hepatitis C virus subtype 1a strain HC-TN, complete genome | 9528 | ..................... | 9548 | 100 |
EU363761.1 | Recombinant Hepatitis C virus H77C/JFH1, complete genome | 9595 | ..................... | 9615 | 100 |
AB426117.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima | 9488 | ..................... | 9508 | 100 |
AB435162.2 | Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima | 9550 | ..................... | 9570 | 100 |
EU857431.1 | Hepatitis C virus subtype 1b isolate Whu, complete genome | 9532 | ..................... | 9552 | 100 |
AB442219.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B- | 9516 | ..................... | 9536 | 100 |
AB442220.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH | 9516 | ..................... | 9536 | 100 |
AB442221.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH | 9516 | ..................... | 9536 | 100 |
AB442222.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B- | 9519 | ..................... | 9539 | 100 |
FN435993.1 | Hepatitis C virus subtype 1b complete genome, isolate EU1, genomic RN | 9542 | ..................... | 9562 | 100 |
AB520610.1 | Hepatitis C virus subtype 1a genomic RNA, complete genome, strain: HC | 9527 | ..................... | 9547 | 100 |
GU133617.1 | Hepatitis C virus subtype 1b, complete genome | 9575 | ..................... | 9595 | 100 |
FN666428.2 | Hepatitis C virus gene for polyprotein, genomic RNA, subtype 2q, isol | 9522 | ..................... | 9542 | 100 |
D84262.2 | Hepatitis C virus (isolate Th580) genomic RNA, complete genome GCCAGC | 9557 | ..................... | 9577 | 100 |
AF177036.1 | Hepatitis C virus subtype 2a strain HC-J6CH clone pJ6CF, complete gen | 9640 | ..................... | 9660 | 100 |
AF009606.1 | Hepatitis C virus subtype 1a polyprotein gene, complete cds | 9575 | ..................... | 9595 | 100 |
AJ132997.1 | Hepatitis C virus, complete genome, isolate HCV-AD78P1 | 9462 | ..................g.. | 9482 | 95 |
AF169005.1 | Hepatitis C virus subtype 2a isolate NDM59, complete genome | 9629 | .....c............... | 9649 | 95 |
FJ462439.1 | Hepatitis C virus isolate QC384, complete genome | 5869 | _____....g.........t. | 5884 | 66 |
EF589161.1 | Hepatitis C virus subtype 4f strain IFBT88 polyprotein gene, partial | 5809 | _____....g.........__ | 5822 | 61 |
EU256015.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V57/2004, complete | 5788 | _____....g.........__ | 5801 | 61 |
EU260395.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V10/2005, complete | 9321 | ............_________ | 9332 | 57 |
EU155247.2 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V1/2005, complete | 9312 | ............_________ | 9323 | 57 |
EU255967.1 | Hepatitis C virus subtype 1a isolate HCV-1a/US/BID-V171/1997, complet | 9293 | ............_________ | 9304 | 57 |